PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g001170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 325aa    MW: 37019.6 Da    PI: 6.1566
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g001170.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.0006378100123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ C+k F+++  L  H  +H
  Sopen06g001170.1  78 FQCKGCKKIFNSHQALGGHRASH 100
                       89**************9999888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.51E-777100No hitNo description
PfamPF139123.0E-778102IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6678105IPR007087Zinc finger, C2H2
SMARTSM003550.4778100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SuperFamilySSF576673.51E-7165192No hitNo description
PfamPF139123.1E-12169193IPR007087Zinc finger, C2H2
SMARTSM003550.29170192IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307170192IPR007087Zinc finger, C2H2
PROSITE patternPS000280172192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MLGNNQSTSD HDHDHVDVEK SEYYYYGPDV KDKQHCSREE EEDLANCLVM LSNKSYDLSD  60
NSNKEAKNKA KEVEKGMFQC KGCKKIFNSH QALGGHRASH KKVKGCYAAK LDDNIKDDDD  120
NNNNDDDNND IDDDSIISPS DLILHQESND FQSQSPTSSS SFSRKRSRVH QCSICHRVFS  180
SGQALGGHKR CHWLTSSLPE TTFMPTFQEI QYHNQEQVLY NKPLFINNSH QPLDLNFPEQ  240
LGNPTEVGLK LHNNPFEHEG PRSQLQLWTE DTNQNHKRKD SLCREENRKA KEAKLSNLKD  300
VNLDKGSSSW LQVGIGPTPD IFATL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079055.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLK4C3020.0K4C302_SOLLC; Uncharacterized protein
TrEMBLM1CY440.0M1CY44_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000772630.0(Solanum tuberosum)
STRINGSolyc06g005180.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.16e-23C2H2-like zinc finger protein